Multimedia Information Processing Group

µCT Toolbox

A MATLAB toolbox for working with very high resolution (e.g. micro-)CT volumes.

  • 3D cortex segmentation
  • Cortical Thickness measurement
  • Mesh creation for cortical surface


Example output

Example segmentation Meshing example output
Central slice of segmentation result Mesh of cortical center surface colored with Ct.Th.


Binary releases are available for Linux, Windows and macOS.

The repository can be found here.

Contact/Maintainer: Stefan Reinhold